Refugee health often gets attention during crises like disease outbreaks or malnutrition. Yet, some serious impacts are less visible. One example is how forced migration affects the gut bacteria, which are essential for immunity and long-term health.
The gut is home to trillions of bacteria, viruses, and fungi, known as the gut microbiome. These tiny organisms help us digest food, boost our immune systems, and fend off illnesses. A healthy microbiome is diverse, with many beneficial bacteria that protect us from infections and inflammation.
Research shows that refugees tend to have different gut microbiomes compared to those who haven’t been displaced. They often have fewer types of microbes, indicating a lack of diversity. These differences arise from the challenging situations refugees face before, during, and after displacement.
Understanding these changes can enhance healthcare for refugees and highlight how social inequalities can physically impact health.
One common finding is the presence of harmful bacteria and antibiotic-resistant strains in their gut microbiomes. Antibiotic-resistant bacteria don’t respond to standard treatments, making infections harder to manage.
Poor sanitation and contaminated environments are major contributors to this issue. Many refugees come from areas affected by conflict, where access to clean water and sanitation is limited. Drinking unsafe water or eating contaminated food can lead to harmful bacteria settling in the gut.
Common culprits include bacteria like E. coli, Salmonella, and Shigella, which can cause stomach issues and, in severe cases, dehydration or long-term digestive problems.
Repeated infections in crowded living conditions disrupt the normal balance of gut microbes. Over time, harmful species can dominate, leading to poorer gut health. It’s a cycle that breaches not only physical health but also mental well-being. Chronic stress is prevalent among refugees, stemming from war, violence, and the uncertainty of their situations. Studies show that stress affects gut health through the gut-brain connection, influencing immune responses and hormone levels.
Long-term stress can increase inflammation in the body, favoring harmful microbes while decreasing beneficial ones. Stress can even reduce the numbers of helpful bacteria like Lactobacillus and Bifidobacterium, which are vital for a healthy gut.
Antibiotic use also plays a significant role in this cycle. In low-resource or conflict zones, antibiotics are often used frequently, leading to antibiotic resistance. Refugees may receive antibiotics without adequate diagnosis, which can enable resistant bacteria to thrive.
Moreover, living conditions during displacement—such as overcrowded shelters—heighten the risk of infections spreading. With overcrowding and limited sanitation, infectious diseases can spread rapidly.
A sudden shift from traditional diets to emergency aid—typically low in fiber—compounds these issues. Diets low in fiber deprive beneficial gut bacteria of nutrients, making it easier for harmful bacteria to flourish.
Malnutrition poses another significant risk, especially for vulnerable groups like children, whose gut microbiomes are still developing. Even after resettlement, refugees may still carry antibiotic-resistant bacteria, and barriers like language and access to culturally appropriate healthcare can hinder recovery.
The spread of harmful bacteria in refugee populations is a public health concern. Addressing this requires coordinated public health efforts, such as improving sanitation, careful antibiotic prescribing, stress-aware care, and nutritional support. It’s essential to understand how these factors interact to develop effective healthcare strategies that protect both refugee communities and public health.
According to a recent report by the UNHCR, addressing refugee health issues can help mitigate broader public health risks, as infectious diseases can easily cross borders. Understanding and acting on these health concerns is crucial—not just for refugees, but for everyone.

